WholeCellViz is a web-based software program for visually analyzing whole-cell simulations.
WholeCellViz enables users to interactively analyze many aspects of cell physiology including: Cell mass, volume, and shape, Metabolite, RNA, and protein copy numbers, Metabolic reaction fluxes, Molecular machine statuses – DNA polymerase, RNA polymerase, ribosome, FtsZ ring, and the Chromosome copy number, superhelicity, integrity, and DNA binding status.
Currently, WholeCellViz provides access to cached simulations of the Gram-positive bacterium Mycoplasma genitalium 2 . See the Advanced usage section below for information about how to install WholeCellViz locally to use the software to run and analyze your own simulations and/or other high-throughput biological data, as well as how to add additional visualizations.