treefam.org - TreeFam: Home page

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Description: EMBL-EBI

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TreeFam is a database composed of phylogenetic trees inferred from animal genomes. It provides orthology/parology predictions as well the evolutionary history of genes. (see the BRCA2 gene family page as an example) . Search TreeFam (HMM-based protein sequence search vs. TreeFam & Pfam HMMs) Enter Protein Sequence here Insert into tree Insert into TreeFam gene tree using Parsimony ( super-fast, might insert into several branches) Maximum Likelihood ( more accurate, might take a bit longer)

Learn about how TreeFam builds families, alignments, and trees and how families defined in TreeFam.

Links to treefam.org (1)

• xfam.org Xfam