description/p> --> Introduction Applications Projects and Funding Publications Media Team Collaborators Tweets from @IndraSysBio Tweets from @IndraSysBio Twitter GitHub Email This website describes projects that are led by Benjamin M. Gyori at Northeastern University since August 2023. Previously, the research group was based at the Laboratory of Systems Pharmacology , Harvard Program in Therapeutic Science (HiTS) , at Harvard Medical School .
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system that uses natural language processing and structured databases to collect mechanistic and causal assertions, represent them in a standardized form, and assemble them into causal graphs or dynamical models. Internally, INDRA performs knowledge assembly to correct errors, find and resolve redundancies, infer missing information, filter to a scope of interest and assess belief. Code Docs REST API
EMMAA (Ecosystem of Machine-maintained Models with Automated Analysis) monitors the scientific literature for new findings and automatically updates a set of disease-specific models with new knowledge. It also automatically analyzes these models against a set of test conditions (typically experimental observations) and measures the effect of new knowledge on these results. It then notifies users about relevant new analysis results. Website Code Docs REST API INDRA Biomedical Discovery Engine The INDRA
Bioregistry
Biopragmatics Stack | GitHub site for the Biopragmatics Stack
Biopragmatics | Unraveling complex biology with biological knowledge graphs. Content licensed under CC BY 4.0.
Biopragmatics Stack | GitHub site for the Biopragmatics Stack