emmahodcroft.com - Emma Hodcroft - PhD

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I am a post-doctoral researcher at the ISPM, University of Bern in Switzerland, working with Christian Althaus. The majority of my past research has been on the phylogenetics, molecular epidemiology, and simulation of HIV, and I was previously involved in the PANGEA_HIV initiative, funded by the Bill & Melinda Gates Foundation.

I'm now working on nextstrain . I previously was deeply involved in expanding Nextstrain to work with bacteria (doing some tuberculosis work in the process), and was part of a major 'modular' refactor of the 'augur' and 'auspice' code. More recently I've been working on Enterovirus-D68 - check out our Nextstrain.org build here .

At the moment, I am working full-time on SARS-CoV-2 in a number of different ways, but am proud to be part of the Nextstrain team supporting the SARS-CoV-2 builds . (More information in 'Research' below.)

Links to emmahodcroft.com (2)

• hodcroft.com Emma Hodcroft - PhD
• nextstrain-augur.readthedocs.io Augur: A bioinformatics toolkit for phylogenetic analysis — Augur 24.2.3 documentation