Description: A coding transcript is comprised of UnTranslated Region (UTR) at the 5' and 3' ends, and the CoDing sequence (CDS). To see the sequence of the UTR and CDS, you must select a splice variant, and be in the Transcript tab. Exons and Introns. Exons view shows UTR, CDS, introns and flanking sequence for one transcript. More about Exons view: Help page
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Jul 12, 2023 · T-DNA sequence flank lengths. The length of the flanks varied when using either CLC Bio or Geneious software for the same genotype. Geneious provided on average longer flanks (Supplementary Table 2). The average flank length at the left end T-DNA was 344 bp in CLC Bio and 567 bp in Geneious. Upstream Flank and Downstream Flank: Sequence upsteam and downstream of a variation (100 bases, not including the variation); from the UCSC hg19 genome sequence; upstream and downstream are relative to th
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